Basically, for a positive ground pedal, you just have to think of the electrical flow as backwards through the pedal circuit. So any polar component on the PCB (e.g. electrolytic caps, diodes) have to be soldered in the reverse orientation. Then, when you wire in the battery or AC adapter jack, you attach the positive lead to the input jack ring and the negative lead to the 9V eyelet on the PCB--the exact opposite of how the vast majority of effect pedals are wired. Hence, the DC current flows in the opposite direction through the pedal circuit.
The cool part of this wiring method is that you can still use a standard negative-tip 9V effects adapter to power it; you just can't power any negative ground pedals from the same power adapter. If you do, the adapter shorts out (and may overheat or be damaged) and the effects attached to it won't work, though they won't be harmed by doing this. Alternatively, you could wire the AC adapter jack itself backwards, too, but then you'd need to run it with a positive-tip adapter.
I've read that there are ways to wire a negative ground circuit to use PNP transistors, but I understand these combinations often give oscillation problems and are best avoided. Apparently, GGG (where I got the PCB and all the instructions/diagrams for this fuzz pedal project) used to offer a negative ground PNP version of the pedal but no longer do because of the high frequency of problems with that combination.